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Metabolic flux analysis for calcium dependent antibiotic (CDA) production in Streptomyces coelicolor.

H. B. Kim, C. P. Smith, J. Micklefield and F. Mavituna*

Metabolic Engineering. 2004;6:313-325.

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Abstract

The calcium dependent antibiotic (CDA) is a nonribosomal lipopeptide produced by Streptomyces coelicolor. We constructed a metabolic network of more than 400 reactions for the primary and secondary metab. of S. coelicolor and used computational metabolic flux balancing to investigate some of the factors affecting growth and prodn. of CDA. Computational results indicated that the CDA prodn. was concomitant with growth. Computational specific growth rates were twice as high as the exptl. specific growth rates. Metabolic flux distributions and sensitivity analyses computed for various phases of the batch culture indicated that the specific CDA prodn. rate was affected by nitrogen assimilation, pentose phosphate pathway, shikimate biosynthesis, and oxoglutarate fluxes. Consequently, these metabolic targets were tested using genetic deletions in the model which increased the in silico specific CDA prodn. rate. [on SciFinder (R)]

Keyword(s)

Growth (kinetics metabolic flux anal. for calcium dependent antibiotic (CDA) prodn. in Streptomyces coelicolor) Fermentation Streptomyces coelicolor (metabolic flux anal. for calcium dependent antibiotic (CDA) prodn. in Streptomyces coelicolor) Simulation and Modeling (metabolic flux anal. metabolic flux anal. for calcium dependent antibiotic (CDA) prodn. in Streptomyces coelicolor) Lipopeptides Role: BMF (Bioindustrial manufacture), BIOL (Biological study), PREP (Preparation) (nonribosomal, calcium dependent antibiotic metabolic flux anal. for calcium dependent antibiotic (CDA) prodn. in Streptomyces coelicolor) Metabolism (secondary metabolic flux anal. for calcium dependent antibiotic (CDA) prodn. in Streptomyces coelicolor)

Bibliographic metadata

Type of resource:
Content type:
Published date:
Journal title:
ISSN:
Publisher:
Volume:
6
Start page:
313
End page:
325
Pagination:
313-325
Digital Object Identifier:
10.1016/j.ymben.2004.04.001
Related website(s):
  • Related website
Access state:
Active

Institutional metadata

University researcher(s):

Record metadata

Manchester eScholar ID:
uk-ac-man-scw:1a4603
Created:
6th August, 2009, 10:32:36
Last modified:
17th November, 2012, 13:26:47

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