Dr Chris Knight - publications

2011

• Kathleen M Carroll, Deborah M Simpson, Claire E Eyers, Christopher G Knight, Philip Brownridge, Warwick Dunn, Catherine L Winder, Karin Lanthaler, Pınar Pir, Naglis Malys , Douglas B Kell, Stephen G Oliver, Simon J Gaskell, Robert J Beynon. (2011). Absolute quantification of a metabolic pathway: deployment of a complete QconCAT approach. Molecular and Cellular Proteomics, eScholarID:131025 | DOI:10.1074/mcp.M111.007633
• Channon, A. Aston, E. Day, C. Belavkin, R. V. Knight, C. G. (2011). Critical Mutation Rate Has an Exponential Dependence on Population Size. Presented at European Conference on Artificial Life. Paris: MIT. eScholarID:130546
• Belavkin, R. V. Channon, A. Aston, E. Aston, J. Knight, C. G. (2011). Theory and Practice of Optimal Mutation Rate Control in Hamming Spaces of DNA Sequences. Presented at European Conference on Artificial Life. Paris: MIT. eScholarID:130550

2010

• Christopher G. Knight. (2010). Book Review: Elements of Computational Systems Biology. Eds. H.M. Lodhi & S. Muggleton. Wiley-Blackwell. 2010. Genome Research, 92(4), 324-325. eScholarID:94637 | DOI:doi:10.1017/S0016672310000443
• C G Knight. (2010). Curing the climate? Physics Education, 45(1), 13-17. eScholarID:75669 | DOI:10.1088/0031-9120/45/1/F02
• Christopher G. Knight. (2010). Darwin: Bane or Blessing? Faith and Thought, 49, 12-21. eScholarID:93440
• C. G. Knight, X. X. Zhang, A. Gunn, T. Brenner, R. W. Jackson, S. R. Giddens, S. Prabhakar, N. Zitzmann, P. B. Rainey. (2010). Testing temperature-induced proteomic changes in the plant-associated bacterium Pseudomonas fluorescens SBW25. Environmental Microbiology Reports, eScholarID:76646 | DOI:10.1111/j.1758-2229.2009.00102.x

2009

• Knight CG, Platt M, Rowe W, Wedge D, Khan F, Day PJ, McShea A, Knowles J, Kell DB. (2009). Array-based evolution of DNA aptamers allows modelling of an explicit sequence-fitness landscape. Nucleic Acids Research, 36(1), e6. eScholarID:1c8018 | DOI:10.1093/nar/gkn899
• Silby, M. W.; Cerdeno-Tarraga, A. M.; Vernikos, G. S.; Giddens, S. R.; Jackson, R. W.; Preston, G. M.; Zhang, X.; Moon, C. D.; Gehrig, S.; Godfray, H. C.; Knight, C. G.; Malone, J.; Robinson, Z.; Spiers, A.; Harris, S.; Challis, G. L.; Yaxley, A. M.; Harris, D.; Seeger, K.; Murphy, L.; Rutter, S.; Squares, R.; Quail, M.; Saunders, E.; Mavromatis, K.; Brettin, T. S.; Bentley, S. D.; Hothersall, J.; Stephens, E.; Thomas, C. M.; Parkhill, J.; Levy, S. B.; Rainey, P. B.; Thomson, N. R. (2009). Genomic and functional analyses of diversity and plant interactions of Pseudomonas fluorescens. Genome Biology, 10(5), R51-. eScholarID:6853 | DOI:10.1186/gb-2009-10-5-r51
• Knight, C.G. and J.W. Pinney. (2009). Making the right connections: biological networks in the light of evolution. Bioessays, 31(10), 1080-1090. eScholarID:7074 | DOI:10.1002/bies.200900043

2007

• Bantinaki E, Kassen R, Knight CG, Robinson Z, Spiers AJ, Rainey PB. (2007). Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity. Genetics, 176(1), 441-53. eScholarID:1c7002 | PMID:17339222 | DOI:10.1534/genetics.106.069906
• Knight CG, Knight SH, Massey N, Aina T, Christensen C, Frame DJ, Kettleborough JA, Martin A, Pascoe S, Sanderson B, Stainforth DA, Allen MR. (2007). Association of parameter, software, and hardware variation with large-scale behavior across 57,000 climate models. Proceedings of the National Academy of Sciences of the United States of America, 104(30), 12259-64. eScholarID:1c6960 | PMID:17640921 | DOI:10.1073/pnas.0608144104
• Jones J, Studholme DJ, Knight CG, Preston GM. (2007). Integrated bioinformatic and phenotypic analysis of RpoN-dependent traits in the plant growth-promoting bacterium Pseudomonas fluorescens SBW25. Environmental Microbiology, 9(12), 3046-3064. eScholarID:1c7006

2006

• Beaumont HJE, Gehrig SM, Kassen R, Knight CG, Malone J, Spiers AJ, Rainey PB. (2006). The genetics of phenotypic innovation. In Logan NA, Lappin-Scott HM, Oyston PCF (Ed.), Prokaryotic Diversity: Mechanisms and Significance. (pp. 14). Cambridge University Press. eScholarID:3c263
• Knight CG, Zitzmann N, Prabhakar S, Antrobus R, Dwek R, Hebestreit H, Rainey PB. (2006). Unraveling adaptive evolution: how a single point mutation affects the protein coregulation network. Nature genetics, 38(9), 1015-22. eScholarID:1c6959 | PMID:16921374 | DOI:10.1038/ng1867

2005

• Knight CG,Beale CM. (2005). Pale Rock Sparrow Carpospiza brachydactyla in the Mount Lebanon range: modelling breeding habitat. Ibis, 147, 324-333. eScholarID:1c7005

2004

• Knight CG, Beale CM. (2004). Breeding habitat of the Pale Rock Sparrow Carpospiza brachydactyla in the Mount Lebanon range. Sandgrouse, 26, 127-131. eScholarID:1c7007
• Knight CG, Kassen R, Hebestreit H, Rainey PB. (2004). Global analysis of predicted proteomes: functional adaptation of physical properties. Proceedings of the National Academy of Sciences of the United States of America, 101(22), 8390-5. eScholarID:1c6961 | PMID:15150418 | DOI:10.1073/pnas.0307270101
• Christopher G. Knight. (2004). Storia di un verme. Kos, 231, 60-63. eScholarID:94639

2002

• Patel MN, Knight CG, Karageorgi C, Leroi AM. (2002). Evolution of germ-line signals that regulate growth and aging in nematodes. Proceedings of the National Academy of Sciences of the United States of America, 99(2), 769-74. eScholarID:1c6962 | PMID:11805331 | DOI:10.1073/pnas.012511099

2001

• Knight CG, Azevedo RB, Leroi AM. (2001). Testing life-history pleiotropy in Caenorhabditis elegans. Evolution; international journal of organic evolution, 55(9), 1795-804. eScholarID:1c7004 | PMID:11681734

2000

• Knight CG, Patel MN, Azevedo RB, Leroi AM. (2000). A novel mode of ecdysozoan growth in Caenorhabditis elegans. Evolution & development, 4(1), 16-27. eScholarID:1c7003 | PMID:11871396