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Dr Julia Handl - publications

List of publications

2017

  • Diaz, J. E., Handl, J., & Xu, D. (2017). Evolutionary Robust Optimization in Production Planning - Interactions between Number of Objectives, Sample Size and Choice of Robustness Measure. Computers and Operations Research, 79, 266-278. DOI: 10.1016/j.cor.2016.06.020. Publication link: f7f88580-485a-42be-a94f-2ecf055a8d21

2016

  • Garza-Fabre, M., Kandathil, S. M., Handl, J., Knowles, J., & Lovell, S. C. (2016). Generating, Maintaining and Exploiting Diversity in a Memetic Algorithm for Protein Structure Prediction. Evolutionary Computation. DOI: 10.1162/EVCO_a_00176. Publication link: 366345f1-ae21-46b2-8e7c-39a27f807d44 | PubMed:26908350
  • Kandathil, S. M., Lovell, S. C., & Handl, J. (2016). Toward a detailed understanding of search trajectories in fragment assembly approaches to protein structure prediction. Proteins: Structure, Function and Bioinformatics, 84(4), 411-26. DOI: 10.1002/prot.24987. Publication link: a57ace85-7389-4273-aee1-0f743e8a2e55 | PubMed:26799916

2015

  • Khan, R., Yang, J-B., & Handl, J. (2015). Interactive multi-objective vehicle routing via GA-based dynamic programming. In host publication.. Publication link: c2752d06-7a5d-4f9a-b1ba-622ac1e7f4b8
  • Allmendinger, R., Handl, J., & Knowles, J. (2015). Multiobjective Optimization: When Objectives Exhibit Non-Uniform Latencies. European Journal of Operational Research, 243(2), 497-513. DOI: 10.1016/j.ejor.2014.09.033. Publication link: e33a9348-2def-41e2-a4ea-f220581505c0
  • Handl, J., Corne, D., & Knowles, J. (2015). Evolutionary Clustering. In Encyclopedia of Machine Learning (2nd edition).. Publication link: 7eb9d0c6-c68c-47ee-9c25-4b352a50205c
  • Lu, E., & Handl, J. (2015). Multicriterion Segmentation of Demand Markets to Increase Forecasting Accuracy of Analogous Time Series: A First Investigation. In Lecture Notes in Computer Science, Volume 9108. (pp. 379-388). Publication link: 7f69b80b-2347-44dc-8cb5-c3b783756495
  • Handl, J., & Knowles, J. (2015). Nature-inspired Clustering Approaches. In Handbook of Cluster Analysis: Handbooks of Modern Statistical Methods. Chapman & Hall/CRC. . Publication link: 5d78d637-cf94-44d2-a1c3-005a3fffd1ea
  • Diaz, J. E., & Handl, J. (2015). Implicit and Explicit Averaging Strategies for Simulation-Based Optimization of a Real-World Production Planning Problem.Informatica, 39(2). . Publication link: 34f25a17-bdae-48b2-9d33-9f13b84d604d
  • O'Hagan, S., Swainston, N., Handl, J., & Kell, D. B. (2015). A 'rule of 0.5' for the metabolite-likeness of approved pharmaceutical drugs. Metabolomics, 11(2), 323-339. DOI: 10.1007/s11306-014-0733-z. Publication link: 08acf661-f307-4e92-9f78-d540c81fd13a | PubMed:25750602

2013

  • Aler, R., Handl, J., & Knowles, J. D. (2013). Comparing multi-objective and threshold-moving ROC curve generation for a prototype-based classifier. In GECCO 2013 - Proceedings of the 2013 Genetic and Evolutionary Computation Conference|GECCO - Proc. Genet. Evol. Comput. Conf.. (pp. 1029-1036). ACM. DOI: 10.1145/2463372.2463504. Publication link: ca926e7b-0785-470e-8424-d568b19a74ba
  • Handl, J., & Knowles, J. (2013). Evidence accumulation in multiobjective data clustering. In host publication. (Vol. 7811, pp. 543-557). Springer Verlag. DOI: 10.1007/978-3-642-37140-0_41. Publication link: a0f0b8bc-b7d0-4e75-84db-4539c002bdbd

2012

  • Handl, J., Knowles, J., Vernon, R., Baker, D., & Lovell, S. C. (2012). The dual role of fragments in fragment-assembly methods for de novo protein structure prediction. Proteins: Structure, Function and Bioinformatics, 80(2), 490-504. DOI: 10.1002/prot.23215. Publication link: e66c0808-f825-4f79-8bd8-9ea987d9d7d9
  • Handl, J., & Knowles, J. (2012). Clustering criteria in multiobjective data clustering. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 7492, pp. 32-41). Berlin/Heidelberg: Springer Verlag. DOI: 10.1007/978-3-642-32964-7_4. Publication link: 426a48da-a867-499e-b7b0-c42b668c571c

2010

  • Adiamah, D., Handl, J., & Schwartz, J. M. (2010). Generic dynamic modeling of metabolic systems. In Proceedings Dynamic Days South America 2010: International Conference on Chaos and Nonlinear Dynamics.. Publication link: 0c05db26-7ec0-47e3-a8d3-ce52d1d62f9b
  • Adiamah, D. A., Handl, J., & Schwartz, J. M. (2010). Streamlining the construction of large-scale dynamic models using generic kinetic equations. Bioinformatics, 26(10), 1324-1331. [btq136]. DOI: 10.1093/bioinformatics/btq136. Publication link: 081886b0-1143-452d-9bd3-44c4acd9650a
  • Handl, J., Corne, D., & Knowles, J. (2010). Evolutionary Clustering. In Encyclopedia of Machine Learning. (pp. 332-337). Publication link: 205dd316-197f-498c-8f23-f9c6ea42fd9e

2009

2008

  • Handl, J., & Knowles, J. (2008). Modes of Problem Solving with Multiple Objectives: Implications for Interpreting the Pareto Set and for Decision Making. In Multiobjective Problem Solving from Nature. (pp. 131-151). Springer Verlag. DOI: 10.1007/978-3-540-72964-8_7. Publication link: 572ac705-ecf2-4de2-aa2b-4d485a49efbd
  • Handl, J., Lovell, S. C., & Knowles, J. (2008). Multiobjectivization by decomposition of scalar cost functions. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 5199, 31-40. DOI: 10.1007/978-3-540-87700-4_4. Publication link: 0f539a35-efdd-4269-b98c-e3c5f45c633b
  • Handl, J., Lovell, S. C., & Knowles, J. (2008). Multiobjectivization by decomposition of scalar cost functions. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 5199, pp. 31-40). Berlin Heidelberg: Springer Verlag. DOI: 10.1007/978-3-540-87700-4_4. Publication link: a306ec49-1e48-4689-a365-1e22ce05c548
  • Handl, J., Lovell, S. C., & Knowles, J. (2008). Investigations into the effect of multiobjectivization in protein structure prediction. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 5199, pp. 702-711). Berlin Heidelberg: Springer Verlag. DOI: 10.1007/978-3-540-87700-4_70. Publication link: d1432aec-3a3b-406e-a0d1-101299802596
  • Handl, J., Lovell, S. C., & Knowles, J. (2008). Investigations into the effect of multiobjectivization in protein structure prediction. Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics), 5199, 702-711. DOI: 10.1007/978-3-540-87700-4_70. Publication link: f392f90e-b90b-4c27-8b06-23251ae86c09

2007

2006

  • Handl, J., & Knowles, J. (2006). Nature-inspired approaches to clustering. AISB QUARTERLY, 124. . Publication link: 0e1aa0e6-de42-4041-9058-20c41f357b58
  • Handl, J., & Knowles, J. (2006). Feature subset selection in unsupervised learning via multiobjective optimization. International Journal of Computational Intelligence Research, 2(3), 217-238. DOI: 10.5019/j.ijcir.2006.64. Publication link: 8d7d86cc-80d3-4b4e-9452-bca0dd81caf7
  • Handl, J., & Knowles, J. (2006). Representations, Operators, and Empirical Evaluation-An Investigation of Representations and Operators for Evolutionary Data Clustering with a Variable Number of Clusters. In Lecture Notes in Computer Science. (Vol. 4193, pp. 839-849). Berlin: Springer-Verlag, 1973-. . Publication link: e6e5cfc2-4bdd-4e9f-9ac5-023b36c40a4d
  • Handl, J., & Knowles, J. (2006). Multi-objective clustering and cluster validation. In Studies in Computational Intelligence|Stud. Comput. Intell.. (Vol. 16, pp. 21-47). Springer Verlag. DOI: 10.1007/11399346_2. Publication link: e1d35181-d9f0-4c12-9039-e3dfc53f60fd
  • Handl, J., & Knowles, J. (2006). An investigation of representations and operators for evolutionary data clustering with a variable number of clusters. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 4193, pp. 839-849). Springer Verlag. . Publication link: bce8cfc4-cf9b-4ee3-b083-c8dc1e2dba87
  • Handl, J., Knowles, J., & Dorigo, M. (2006). Ant-based clustering and topographic mapping. Artificial Life, 12(1), 35-61. DOI: 10.1162/106454606775186400. Publication link: bb976ff2-244e-4623-91cb-6a8cfd8075c1

2005

  • Handl, J., & Knowles, J. (2005). Multiobjective clustering around medoids. In 2005 IEEE Congress on Evolutionary Computation, IEEE CEC 2005. Proceedings|Congr. Evol. Comput. Proc.. (Vol. 1, pp. 632-639). Publication link: 682866ad-32ce-44e8-af68-1de2e16b61a6
  • Brown, M., Dunn, W. B., Ellis, D. I., Goodacre, R., Handl, J., Knowles, J. D., ... Kell, D. B. (2005). A metabolome pipeline: From concept to data to knowledge. Metabolomics, 1(1), 39-51. DOI: 10.1007/s11306-005-1106-4. Publication link: 4fab0387-cd26-481a-b205-8a7247af3beb
  • Handl, J., & Knowles, J. (2005). Improvements to the scalability of multiobjective clustering. In 2005 IEEE Congress on Evolutionary Computation, IEEE CEC 2005. Proceedings|Congr. Evol. Comput. Proc.. (Vol. 3, pp. 2372-2379). Publication link: 8b588ef6-5c61-4e64-af72-f1394fe0843d
  • Handl, J., & Knowles, J. (2005). Exploiting the trade-off - The benefits of multiple objectives in data clustering. In C. A. Coello Coello, A. Hernandez Aguirre, & E. Zitzler (Eds.), Evolutionary Multi-Criterion Optimization. EMO 2005. (pp. 547-560). (Lecture Notes in Computer Science; Vol. 3410). Springer Verlag. . Publication link: eb19ed16-f7d5-4bfe-8379-a9d854892b06
  • Handl, J., Knowles, J., & Kell, D. B. (2005). Computational cluster validation in post-genomic data analysis. Bioinformatics, 21(15), 3201-3212. DOI: 10.1093/bioinformatics/bti517. Publication link: f623e470-8449-4950-ae70-39ffd308df60 | PubMed:15914541

2004

  • Handl, J., Knowles, J., & Dorigo, M. (2004). Strategies for the increased robustness of ant-based clustering. In Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science)|Lect Notes Artif Intell. (Vol. 2977, pp. 90-104). (LNCS). Springer-Verlag Heidelberg. . Publication link: fda8de6b-afaa-4e8e-823b-420b73da6a70
  • Handl, J., & Knowles, J. (2004). Evolutionary multiobjective clustering. In Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)|Lect. Notes Comput. Sci.. (Vol. 3242, pp. 1081-1091). (LNCS). Springer Verlag. . Publication link: d365fd4a-d012-4877-b1fb-be6767f31ffa
  • Handl, J., Knowles, J., & Dorigo, M. (2004). Strategies for the increased robustness of ant-based clustering. In Lecture Notes in Artificial Intelligence (Subseries of Lecture Notes in Computer Science)|Lect Notes Artif Intell. (Vol. 2977, pp. 90-104). Springer Verlag. . Publication link: 3af892cb-618e-4ca7-9c65-5d618a23bf44

2003

  • Handl, J., Knowles, J., & Dorigo, M. (2003). Ant-based clustering: a comparative study of its relative performance with respect to k-means, average link and 1d-som. In Design and Application of Hybrid Intelligent Systems. (pp. 204-213). Citeseer. . Publication link: b70dbded-bce3-4090-82a9-79ff7f36f392
  • Handl, J., Knowles, J., & Dorigo, M. (2003). On the performance of ant-based clustering. In Proc. of the 3rd Int. Conf. on Hybrid Intelligent Systems. Citeseer. . Publication link: 1fca35fa-6eca-43aa-bc11-456b0ab87b0d

2002

  • Handl, J., & Meyer, B. (2002). Improved ant-based clustering and sorting in a document retrieval interface. In Parallel Problem Solving from Nature, PPSN VII. (pp. 913-923). Springer Verlag. . Publication link: ef531dac-7fea-4466-81c4-72afec214969