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Genetics of rheumatoid arthritis contributes to biology and drug discovery.

Okada, Yukinori; Wu, Di; Graham, Robert R; Manoharan, Arun; Ortmann, Ward; Bhangale, Tushar; Denny, Joshua C; Carroll, Robert J; Eyler, Anne E; Greenberg, Jeffrey D; Kremer, Joel M; Pappas, Dimitrios A; Trynka, Gosia; Jiang, Lei; Yin, Jian; Ye, Lingying; Su, Ding-Feng; Yang, Jian; Xie, Gang; Keystone, Ed; Westra, Harm-Jan; Esko, TÔnu; Metspalu, Andres; Raj, Towfique; Zhou, Xuezhong; Gupta, Namrata; Mirel, Daniel; Stahl, Eli A; Diogo, Dorothée; Cui, Jing; Liao, Katherine; Guo, Michael H; Myouzen, Keiko; Kawaguchi, Takahisa; Terao, Chikashi; Coenen, Marieke J H; van Riel, Piet L C M; van de Laar, Mart A F J; Guchelaar, Henk-Jan; Huizinga, Tom W J; Dieudé, Philippe; Mariette, Xavier; Louis Bridges Jr, S; Zhernakova, Alexandra; Toes, Rene E M; Ikari, Katsunori; Tak, Paul P; Miceli-Richard, Corinne; Bang, So-Young; Lee, Hye-Soon; Martin, Javier; Gonzalez-Gay, Miguel A; Rodriguez-Rodriguez, Luis; RantapÀÀ-Dahlqvist, Solbritt; Arlestig, Lisbeth; Choi, Hyon K; Kochi, Yuta; Kamatani, Yoichiro; Galan, Pilar; Lathrop, Mark; RACI_Consortium; GARNET_Consortium; Eyre, Steve; Bowes, John; Barton, Anne; de Vries, Niek; Moreland, Larry W; Ohmura, Koichiro; Criswell, Lindsey A; Karlson, Elizabeth W; Taniguchi, Atsuo; Yamada, Ryo; Kubo, Michiaki; Liu, Jun S; Bae, Sang-Cheol; Worthington, Jane; Padyukov, Leonid; Klareskog, Lars; Suzuki, Akari; Gregersen, Peter K; Raychaudhuri, Soumya; Stranger, Barbara E; De Jager, Philip L; Franke, Lude; Visscher, Peter M; Brown, Matthew A; Yamanaka, Hisashi; Mimori, Tsuneyo; Takahashi, Atsushi; Yoshida, Shinji; Xu, Huji; Behrens, Timothy W; Siminovitch, Katherine A; Momohara, Shigeki; Matsuda, Fumihiko; Yamamoto, Kazuhiko; Plenge, Robert M

Nature. 2014;506(7488):376-381.

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Abstract

A major challenge in human genetics is to devise a systematic strategy to integrate disease-associated variants with diverse genomic and biological data sets to provide insight into disease pathogenesis and guide drug discovery for complex traits such as rheumatoid arthritis (RA). Here we performed a genome-wide association study meta-analysis in a total of >100,000 subjects of European and Asian ancestries (29,880 RA cases and 73,758 controls), by evaluating ∌10 million single-nucleotide polymorphisms. We discovered 42 novel RA risk loci at a genome-wide level of significance, bringing the total to 101 (refs 2, 3, 4). We devised an in silico pipeline using established bioinformatics methods based on functional annotation, cis-acting expression quantitative trait loci and pathway analyses-as well as novel methods based on genetic overlap with human primary immunodeficiency, haematological cancer somatic mutations and knockout mouse phenotypes-to identify 98 biological candidate genes at these 101 risk loci. We demonstrate that these genes are the targets of approved therapies for RA, and further suggest that drugs approved for other indications may be repurposed for the treatment of RA. Together, this comprehensive genetic study sheds light on fundamental genes, pathways and cell types that contribute to RA pathogenesis, and provides empirical evidence that the genetics of RA can provide important information for drug discovery.

Bibliographic metadata

Type of resource:
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Publication status:
Published
Publication type:
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Author(s):
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ISSN:
Volume:
506
Issue:
7488
Start page:
376
End page:
381
Total:
5
Pagination:
376-381
Digital Object Identifier:
10.1038/nature12873
Pubmed Identifier:
24390342
Pii Identifier:
nature12873
Attached files embargo period:
Immediate release
Attached files release date:
8th January, 2014
Access state:
Active

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Record metadata

Manchester eScholar ID:
uk-ac-man-scw:216734
Created by:
Ingram, Mary
Created:
8th January, 2014, 16:26:22
Last modified by:
Ingram, Mary
Last modified:
2nd November, 2015, 14:03:03

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